Generator

Part:BBa_K1390009

Designed by: Ruediger Frederik Busche   Group: iGEM14_Braunschweig   (2014-07-04)

MMOD-His Generator

This is the His-tagged version of mmoD from Methylococcus capsulatus under control of Lac-promotor R0011 with RBS B0032 and the terminator B0032.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 197



Biology and Usage

Another open reading frame within the mmo operon encodes MMOD whose function has not yet been clearly determined [1].


Design and coexpression

We put BBa_K1390009 under the control of the inducible lacl promoter (R0011) which has a low leakiness and is easily inducible with IPTG. This strong, frequently used promotor is well characterised in the iGEM registry and is reported to be well functioning. We also added the extensively documented weak ribosome binding site (B0032) with a strength of 33.96% compared to B0034 to diminish the formation of inclusion bodies and a double terminator (B0015). For expression we decided to use pSB1A3 because of its ampicillin resistance (in contrast to the chaperone plasmid which carries a chloramphenicol resistance cassette). To ensure proper folding of the BBa_K1390009 in E. coli JM109 we coexpressed it with chaperones (GroES, GroEL). The TaKaRa Clontech Chaperone Plasmid Set proved to be appropriate for this as it contains a chaperone plasmid encoding GroES and GroEL [http://2014.igem.org/Team:Braunschweig/Results-content#chaperone_table(chaperone plasmid C2)] which can be coexpressed with BBa_K1390009 [2]. Synthesis of the protein can be induced as soon as the chaperones are operational.

Expression Analysis

To detect whether the subunit is synthesized in soluble form or in inclusion bodies it was provided with a 6xHis-tag. We analyzed the expression by Western Blot. We separated the soluble fraction and the inclusion body fraction of the subpart after coexpression with chaperone plasmid 2. The subpart could be expressed in the soluble fraction with the aid of GroES and GroEL encoded on the plasmid (Figure 1).


Figure 1: Western blot of BBa_K1390009 (D) coexpressed with chaperone plasmid 2. Ladder (M): Precision Plus Protein™ All Blue, positive control (+): His-tagged scFv, expected molecular weight: 11,9 kDa

Summary

BBa_K1390009 is synthesizable in the soluble fraction by use of several chaperones. We recommend the use of GroEL/GroES provided by Takara (Takara Bio Inc., Japan)

Reference

[1] Semran JD, Jagadevan S, DiSpirito AA, Khalifa A, Scanlan J, Bergman BH, Freemeier BC, Baral BS, Bandow NL, Vorobev A, Haft DH, Vuilleumier S, Murrel JC (2013) Methanobactin and MmoD work in concert to act as the “copper-switch” in methanotrophs. Environ Microbiol 15:3077-86
[2] Chaperone Plasmid Set Product Manual, TaKaRa Bio Inc. 2014

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